/* *! metan dialog version 1.0.7, 5 Dec 2005, T. J. Steichen, steichen@triad.rr.com * metan dialog version 1.0.5, 1 Apr 2004, T. J. Steichen, steichen@triad.rr.com *! for metan version 1.86, 1 Apr 2004, M. J. Bradburn, mike.bradburn@cancer.org.uk Fixed and random effects meta-analysis -------------------------------------- Syntax: metan varlist [if exp] [in range] [, label(namevar=name, yearvar=year) fixed random fixedi randomi peto rr or rd cornfield chi2 breslow notable nograph cohen hedges glass nostandard log sortby(sort_vars) ilevel(#) olevel(#) nokeep xlabel(#,..,#) force t1title(#,..,#) boxsha(#) boxsca(#) texts(#) saving(filename) nowt counts nostats nooverall group1(text) group2(text) effect(text) nobox eform wgt(weightvar) xtick(#,..,#) t2title(#,..,#) b1title(#,..,#) b2title(#,..,#) nointeger cc(#) by(byvar) nosubgroup sgweight legend(text) ] To install in User Statistics menu via Stata commands: . window menu append item "stUserStatistics" "Meta-analysis of Binary and Continuous Data (meta&n)" "db metan" . window menu refresh To permanently install, place the commands in your -profile.do- file. */ VERSION 8.0 INCLUDE _std_medium INCLUDE _ht300 DEFINE _dlgwd 450 INCLUDE header HELP hlp1, view("help metan") RESET res1, label("Reset") DIALOG main, label("metan 1.86 - Meta-analysis of Binary & Continuous") tabtitle("Main") BEGIN GROUPBOX gb_data 10 5 310 _ht1h, /// label("Type of Data:") RADIO r_binary 15 25 60 ., /// label(" Count") first /// onclickon(script main_binary_on) /// onclickoff(script main_binary_off) RADIO r_continuous 75 25 90 ., /// label("Continuous") middle /// onclickon(script main_continuous_on) /// onclickoff(script main_continuous_off) RADIO r_effect_ci 165 25 75 ., /// label("Effect/CI") middle /// onclickon(script main_effect_ci_on) /// onclickoff(script main_effect_ci.off) RADIO r_effect_se 240 25 75 ., /// label("Effect/SE") last /// onclickon(script main_effect_se_on) /// onclickoff(script main_effect_se_off) /* end GROUPBOX gb_data */ TEXT tx_binary 10 50 310 ., /// label("Vars for Counts: a, b, c, d, in that order") VARLIST vl_binary @ _ss @ ., /// label("Vars for a, b, c, d") TEXT tx_contin_exp @ 50 310 ., /// label("Vars for Exp. Group: n, mean, sd, in that order") VARLIST vl_contin_exp @ _ss @ ., /// label("Experimental Group: n, mean, sd") TEXT tx_contin_ctl @ _ss 310 ., /// label("Vars for Control Group: n, mean, sd, in that order") VARLIST vl_contin_ctl @ _ss @ ., /// label("Control Group: n, mean, sd") TEXT tx_effect_ci @ 50 310 ., /// label("Vars for Effects: theta, lowerCI, upperCI, in that order") VARLIST vl_effect_ci @ _ss @ ., /// label("Effect Sizes: theta, lowerCI, upperCI") TEXT tx_effect_se @ 50 310 ., /// label("Vars for Effects: theta, se(theta), in that order") VARLIST vl_effect_se @ _ss @ ., /// label("Effect Sizes: theta, se(theta)") /* end vars */ GROUPBOX gb_labels 10 130 310 _ht3h, /// label("Labels for Data:") CHECKBOX cb_name 20 150 70 ., /// label("Name:") /// onclickon(main.vn_name.enable) /// onclickoff(main.vn_name.disable) VARNAME vn_name 100 150 210 ., /// label("Name Variable") CHECKBOX cb_year 20 170 70 ., /// label("Year:") /// onclickon(main.vn_year.enable) /// onclickoff(main.vn_year.disable) VARNAME vn_year 100 170 210 ., /// label("Year Variable") /* end GROUPBOX gb_labels */ GROUPBOX gb_by 10 200 310 45, /// label("By Variable:") CHECKBOX cb_by 20 220 70 ., /// label(" By:") /// onclickon(script main_by_on) /// onclickoff(script main_by_off) VARLIST vl_by 100 220 210 ., /// label("By Variable") /// option("by") /* end GROUPBOX gb_by */ GROUPBOX gb_sortby 10 250 310 45, /// label("Sort Data:") CHECKBOX cb_sortby 20 270 70 ., /// label(" By:") /// onclickon(main.vl_sortby.enable) /// onclickoff(main.vl_sortby.disable) VARLIST vl_sortby 100 270 210 ., /// label("Name Variable") /// option("sortby") /* end GROUPBOX gb_sortby */ GROUPBOX gb_opts 325 5 120 85, /// label("General Options:") CHECKBOX cb_nokeep 330 25 70 ., /// label("noKeep") /// option("nokeep") CHECKBOX cb_ilevel 330 45 60 ., /// label("ilevel:") /// onclickon(main.ed_ilevel.enable) /// onclickoff(main.ed_ilevel.disable) EDIT ed_ilevel 400 45 40 ., /// label("ilevel") /// numonly default(global S_level) /// option("ilevel") CHECKBOX cb_olevel 330 65 60 ., /// label("olevel:") /// onclickon(main.ed_olevel.enable) /// onclickoff(main.ed_olevel.disable) EDIT ed_olevel 400 65 40 ., /// label("olevel") /// numonly default(global S_level) /// option("olevel") /* end GROUPBOX gb_opts */ FRAME fr_wgt 325 95 120 60 CHECKBOX cb_wgt 330 100 110 ., /// label("Weight Var") /// onclickon(main.vn_wgt.enable) /// onclickoff(main.vn_wgt.disable) VARNAME vn_wgt 330 121 110 ., /// label("Weight Variable") /// option("wgt") /* end wgt */ GROUPBOX gb_by_opts 325 200 120 61, /// label("By Options:") CHECKBOX cb_nosubgroup 330 220 100 ., /// label("noSubGroup") /// option("nosubgroup") CHECKBOX cb_sgweight 330 240 100 ., /// label("sgWeight") /// option("sgweight") /* end GROUPBOX gb_by_opts */ END DIALOG metan_b, tabtitle("Binary...") BEGIN GROUPBOX gb_pool 0 10 210 _ht9h, /// label("Pooling Model") RADIO r_fixed 10 30 190 ., /// label("Fixed, Mantel-Haenszel") first /// onclickoff(program metan_b_bd) /// option("fixed") RADIO r_fixedi @ _ss @ ., /// label("Fixed, Inverse Variance") middle /// onclickoff(program metan_b_bd) /// option("fixedi") RADIO r_random @ _ss 195 ., /// label("Random (M-H heterogeneity)") middle /// onclickon(script metan_b_random_on) /// onclickoff(program metan_b_chi2) /// option("random") RADIO r_randomi @ _ss @ ., /// label("Random (I-V heterogeneity)") middle /// onclickon(script metan_b_random_on) /// onclickoff(program metan_b_chi2) /// option("randomi") RADIO r_peto @ _ss @ ., /// label("Peto") last /// onclickon(script metan_b_peto_on) /// onclickoff(program metan_b_cornfield) /// option("peto") GROUPBOX gb_stat 220 10 120 _ht5h, /// label("Statistic") RADIO r_rr 230 30 80 ., /// label("RR") first /// onclickon(script metan_b_rr_on) /// onclickoff(program metan_b_rr_off) /// option("rr") RADIO r_or @ _ss @ ., /// label("OR") middle /// onclickon(program metan_b_or_on) /// onclickoff(program metan_b_or_off) /// option("or") RADIO r_rd @ _ss @ ., /// label("RD") last /// option("rd") CHECKBOX cb_cornfield 10 140 200 ., /// label("Use Cornfield CI's") /// option("cornfield") CHECKBOX cb_chi2 10 160 200 ., /// label("Use Chi-2 Statistic") /// option("chi2") CHECKBOX cb_breslow 10 180 200 ., /// label("Use Breslow-Day test") /// option("breslow") CHECKBOX cb_log 230 100 200 ., /// label("Log scaled") /// option("log") CHECKBOX cb_eform 230 120 200 ., /// label("Exponentiate") /// option("eform") CHECKBOX cb_notable 230 140 200 ., /// label("noTable") /// option("notable") CHECKBOX cb_nograph 230 160 200 ., /// label("noGraph") /// option("nograph") CHECKBOX cb_cc 10 260 150 ., /// label("Continuity Correction:") /// onclickon(metan_b.ed_cc.enable) /// onclickoff(metan_b.ed_cc.disable) EDIT ed_cc 160 260 65 ., /// label("Continuity Correction") /// option("cc") CHECKBOX cb_nointeger 230 260 200 ., /// label("noInteger") /// option("nointeger") END DIALOG metan_c, tabtitle("Continuous...") BEGIN GROUPBOX gb_pool 0 10 210 _ht3h, /// label("Pooling Model") RADIO r_fixed 10 30 190 ., /// label("Fixed, Inverse Variance") first /// option("fixed") RADIO r_random @ _ss @ ., /// label("Random (I-V heterogeneity)") last /// option("random") GROUPBOX gb_stat 220 10 120 _ht7h, /// label("Statistic") RADIO r_cohen 230 30 100 ., /// label("Cohen") first /// option("cohen") RADIO r_hedges @ _ss @ ., /// label("Hedges") middle /// option("hedges") RADIO r_glass @ _ss @ ., /// label("Glass") middle /// option("glass") RADIO r_nostandard @ _ss @ ., /// label("noStandard") last /// option("nostandard") CHECKBOX cb_notable 230 140 200 ., /// label("noTable") /// option("notable") CHECKBOX cb_nograph 230 160 200 ., /// label("noGraph") /// option("nograph") CHECKBOX cb_nointeger 230 260 200 ., /// label("noInteger") /// option("nointeger") END DIALOG metan_e, tabtitle("Effect...") BEGIN GROUPBOX gb_pool 0 10 210 _ht3h, /// label("Pooling Model") RADIO r_fixed 10 30 190 ., /// label("Fixed, Inverse Variance") first /// option("fixed") RADIO r_random @ _ss @ ., /// label("Random (I-V heterogeneity)") last /// option("random") CHECKBOX cb_eform 230 120 200 ., /// label("Exponentiate") /// option("eform") CHECKBOX cb_notable 230 140 200 ., /// label("noTable") /// option("notable") CHECKBOX cb_nograph 230 160 200 ., /// label("noGraph") /// option("nograph") CHECKBOX cb_effect 10 90 100 ., /// label("Effect Label:") /// onclickon(metan_e.ed_effect.enable) /// onclickoff(metan_e.ed_effect.disable) EDIT ed_effect 115 @ 225 ., /// label("effect label") /// option("effect") END DIALOG graph, tabtitle("Graph Opts") BEGIN CHECKBOX cb_saving 10 10 100 ., /// label("Save graph:") /// onclickon(graph.fi_saving.enable) /// onclickoff(graph.fi_saving.disable) FILE fi_saving 110 10 240 ., /// label("File Name") /// error("Save filename") /// dialogtitle("Save graph") /// filter("Stata Graphs|*.gph") /// save /// option("saving") /* end saving */ GROUPBOX gb_xlabel 10 40 330 _ht3h, /// label("X-axis Tick Labels (comma between):") CHECKBOX cb_xlabel 15 60 45 ., /// label("Set:") /// onclickon(script graph_xlabel_on) /// onclickoff(script graph_xlabel_off) EDIT ed_xlabel 65 @ 270 ., /// label("X Tick labels") /// option("xlabel") CHECKBOX cb_force 15 80 320 ., /// label("Force Scale to Tick Range") /// option("force") /* end tick labels */ CHECKBOX cb_counts 15 115 65 ., /// label("Counts") /// onclickon(script graph_counts_on) /// onclickoff(script graph_counts_off) /// option("counts") CHECKBOX cb_nowt 15 145 85 ., /// label("noWeights") /// option("nowt") CHECKBOX cb_nostats 15 165 85 ., /// label("noStats") /// option("nostats") CHECKBOX cb_nooverall 115 145 85 ., /// label("noOverall") /// option("nooverall") CHECKBOX cb_nobox 115 165 85 ., /// label("noBox") /// option("nobox") /* end switches */ CHECKBOX cb_legend 115 185 70 ., /// label("Legend:") /// onclickon(graph.ed_legend.enable) /// onclickoff(graph.ed_legend.disable) EDIT ed_legend 190 @ 55 ., /// label("legend") /// option("legend") CHECKBOX cb_grp1 85 115 55 ., /// label("Grp 1:") /// onclickon(graph.ed_grp1.enable) /// onclickoff(graph.ed_grp1.disable) EDIT ed_grp1 145 @ 90 ., /// label("Grp1") /// option("group1") CHECKBOX cb_grp2 245 115 55 ., /// label("Grp 2:") /// onclickon(graph.ed_grp2.enable) /// onclickoff(graph.ed_grp2.disable) EDIT ed_grp2 305 @ 90 ., /// label("Grp2") /// option("group2") CHECKBOX cb_boxy 255 145 95 ., /// label("Box yscale:") /// onclickon(graph.ed_boxy.enable) /// onclickoff(graph.ed_boxy.disable) EDIT ed_boxy 355 @ 40 ., /// label("Box yscale") numonly default(1) /// option("boxsca") CHECKBOX cb_boxs 255 165 95 ., /// label("Box shade:") /// onclickon(graph.ed_boxs.enable) /// onclickoff(graph.ed_boxs.disable) EDIT ed_boxs 355 @ 40 ., /// label("Box shading") numonly default(4) /// option("boxsha") CHECKBOX cb_texts 255 185 95 ., /// label("Font scale:") /// onclickon(graph.ed_texts.enable) /// onclickoff(graph.ed_texts.disable) EDIT ed_texts 355 @ 40 ., /// label("Font scale") numonly default(1) /// option("texts") /* end sets */ GROUPBOX gb_gopts7 10 205 390 _ht1h, /// label("Allowed Graph7 Options:") EDIT ed_gopts7 15 225 380 ., /// label("Graph7 Options") CHECKBOX cb_b1 15 255 390 ., /// label("Effect Direction Labels, option b1( ):") /// onclickon(script graph_b1_on) /// onclickoff(script graph_b1_off) TEXT tx_b1_l 10 275 25 ., /// label("Left:") EDIT ed_b1_l 35 275 160 ., /// label(" Left") TEXT tx_b1_r 205 275 35 ., /// label("Right:") EDIT ed_b1_r 240 275 160 ., /// label("Right") /* end Graph7 opts */ END INCLUDE ifin SCRIPT main_binary_on BEGIN main.tx_binary.show main.vl_binary.show main.tx_binary.enable main.vl_binary.enable main.tx_effect_ci.disable main.vl_effect_ci.disable main.tx_effect_ci.hide main.vl_effect_ci.hide main.tx_effect_se.disable main.vl_effect_se.disable main.tx_effect_se.hide main.vl_effect_se.hide main.tx_contin_exp.disable main.vl_contin_exp.disable main.tx_contin_exp.hide main.vl_contin_exp.hide main.tx_contin_ctl.disable main.vl_contin_ctl.disable main.tx_contin_ctl.hide main.vl_contin_ctl.hide graph.cb_counts.enable END SCRIPT main_binary_off BEGIN main.tx_binary.disable main.vl_binary.disable main.tx_binary.hide main.vl_binary.hide graph.cb_counts.disable END SCRIPT main_continuous_on BEGIN main.tx_contin_exp.show main.vl_contin_exp.show main.tx_contin_exp.enable main.vl_contin_exp.enable main.tx_contin_ctl.show main.vl_contin_ctl.show main.tx_contin_ctl.enable main.vl_contin_ctl.enable main.tx_binary.disable main.vl_binary.disable main.tx_binary.hide main.vl_binary.hide main.tx_effect_ci.disable main.vl_effect_ci.disable main.tx_effect_ci.hide main.vl_effect_ci.hide main.tx_effect_se.disable main.vl_effect_se.disable main.tx_effect_se.hide main.vl_effect_se.hide END SCRIPT main_continuous_off BEGIN main.tx_contin_exp.disable main.vl_contin_exp.disable main.tx_contin_exp.hide main.vl_contin_exp.hide main.tx_contin_ctl.disable main.vl_contin_ctl.disable main.tx_contin_ctl.hide main.vl_contin_ctl.hide END SCRIPT main_effect_ci_on BEGIN main.tx_effect_ci.show main.vl_effect_ci.show main.tx_effect_ci.enable main.vl_effect_ci.enable main.tx_effect_se.disable main.vl_effect_se.disable main.tx_effect_se.hide main.vl_effect_se.hide main.tx_binary.disable main.vl_binary.disable main.tx_binary.hide main.vl_binary.hide main.tx_contin_exp.disable main.vl_contin_exp.disable main.tx_contin_exp.hide main.vl_contin_exp.hide main.tx_contin_ctl.disable main.vl_contin_ctl.disable main.tx_contin_ctl.hide main.vl_contin_ctl.hide END SCRIPT main_effect_ci_off BEGIN main.tx_effect_ci.disable main.vl_effect_ci.disable main.tx_effect_ci.hide main.vl_effect_ci.hide END SCRIPT main_effect_se_on BEGIN main.tx_effect_se.show main.vl_effect_se.show main.tx_effect_se.enable main.vl_effect_se.enable main.tx_effect_ci.disable main.vl_effect_ci.disable main.tx_effect_ci.hide main.vl_effect_ci.hide main.tx_binary.disable main.vl_binary.disable main.tx_binary.hide main.vl_binary.hide main.tx_contin_exp.disable main.vl_contin_exp.disable main.tx_contin_exp.hide main.vl_contin_exp.hide main.tx_contin_ctl.disable main.vl_contin_ctl.disable main.tx_contin_ctl.hide main.vl_contin_ctl.hide END SCRIPT main_effect_se_off BEGIN main.tx_effect_se.disable main.vl_effect_se.disable main.tx_effect_se.hide main.vl_effect_se.hide END SCRIPT main_by_on BEGIN main.vl_by.enable main.gb_by_opts.enable main.cb_nosubgroup.enable main.cb_sgweight.enable END SCRIPT main_by_off BEGIN main.vl_by.disable main.gb_by_opts.disable main.cb_nosubgroup.disable main.cb_sgweight.disable END SCRIPT metan_b_random_on BEGIN metan_b.cb_breslow.disable metan_b.cb_chi2.disable END SCRIPT metan_b_peto_on BEGIN metan_b.cb_breslow.disable metan_b.cb_cornfield.disable END PROGRAM metan_b_bd BEGIN if metan_b.r_or { call metan_b.cb_breslow.enable } END PROGRAM metan_b_chi2 BEGIN if metan_b.r_or & !(metan_b.r_random | metan_b.r_randomi) { call metan_b.cb_chi2.enable } END PROGRAM metan_b_cornfield BEGIN if metan_b.r_or { call metan_b.cb_cornfield.enable } END SCRIPT metan_b_rr_on BEGIN metan_b.cb_log.enable metan_b.cb_eform.enable END PROGRAM metan_b_or_on BEGIN call metan_b.cb_log.enable call metan_b.cb_eform.enable call metan_b.r_peto.enable if !metan_b.r_peto { call metan_b.cb_cornfield.enable } if !(metan_b.r_random | metan_b.r_randomi) { call metan_b.cb_chi2.enable } call metan_b.cb_breslow.enable END PROGRAM metan_b_or_off BEGIN if !metan_b.r_rr { call metan_b.cb_log.disable call metan_b.cb_eform.disable } call metan_b.r_peto.disable call metan_b.cb_cornfield.disable call metan_b.cb_chi2.disable call metan_b.cb_breslow.disable END PROGRAM metan_b_rr_off BEGIN if !metan_b.r_or { call metan_b.cb_log.disable call metan_b.cb_eform.disable } END SCRIPT graph_xlabel_on BEGIN graph.ed_xlabel.enable graph.cb_force.enable END SCRIPT graph_xlabel_off BEGIN graph.ed_xlabel.disable graph.cb_force.disable END SCRIPT graph_counts_on BEGIN graph.cb_grp1.enable graph.cb_grp2.enable END SCRIPT graph_counts_off BEGIN graph.cb_grp1.disable graph.cb_grp2.disable graph.cb_grp1.setoff graph.cb_grp2.setoff graph.ed_grp1.disable graph.ed_grp2.disable END SCRIPT graph_b1_on BEGIN graph.tx_b1_l.enable graph.ed_b1_l.enable graph.tx_b1_r.enable graph.ed_b1_r.enable END SCRIPT graph_b1_off BEGIN graph.tx_b1_l.disable graph.ed_b1_l.disable graph.tx_b1_r.disable graph.ed_b1_r.disable END PROGRAM command BEGIN put " metan " if main.r_binary { varlist main.vl_binary } if main.r_continuous { varlist main.vl_contin_exp main.vl_contin_ctl } if main.r_effect_ci { varlist main.vl_effect_ci } if main.r_effect_se { varlist main.vl_effect_se } INCLUDE _ifin_pr beginoptions if main.cb_name | main.cb_year { put "label(" if main.cb_name { put "namevar=" main.vn_name } if main.cb_name & main.cb_year { put ", " } if main.cb_year { put "yearvar=" main.vn_year } put ") " } optionarg main.vl_sortby optionarg main.vl_by optionarg main.ed_ilevel optionarg main.ed_olevel optionarg main.vn_wgt option main.cb_nokeep option main.cb_nosubgroup option main.cb_sgweight if main.r_binary { if !main.vn_wgt { option radio(metan_b r_fixed r_fixedi r_random r_randomi r_peto) } option radio(metan_b r_rr r_or r_rd) option metan_b.cb_cornfield option metan_b.cb_chi2 option metan_b.cb_breslow option metan_b.cb_log option metan_b.cb_eform option metan_b.cb_nograph option metan_b.cb_notable optionarg metan_b.ed_cc option metan_b.cb_nointeger } if main.r_continuous { if !main.vn_wgt { option radio(metan_c r_fixed r_random) } option radio(metan_c r_cohen r_hedges r_glass r_nostandard) option metan_c.cb_nograph option metan_c.cb_notable option metan_c.cb_nointeger } if main.r_effect_se | main.r_effect_ci { if !main.vn_wgt { option radio(metan_e r_fixed r_random) } optionarg metan_e.ed_effect option metan_e.cb_eform option metan_e.cb_nograph option metan_e.cb_notable } optionarg graph.fi_saving optionarg graph.ed_xlabel option graph.cb_force option graph.cb_counts option graph.cb_nowt option graph.cb_nostats option graph.cb_nooverall option graph.cb_nobox optionarg graph.ed_grp1 optionarg graph.ed_grp2 optionarg graph.ed_texts optionarg graph.ed_legend optionarg graph.ed_boxy optionarg graph.ed_boxs put graph.ed_gopts7 " " if graph.cb_b1 { put "b1(*I:" graph.ed_b1_l "*" graph.ed_b1_r ") " } endoptions END